Stanford Genomics

» Stanford Genomics Service Center Announcements «

SFGF + 10x Genomics Office Hours for May:

We added an additional date due to high demand.

Additional date, Wed, May 21st 10:30am-1:30pm, meet at tables by CCSR cafe

please use this link to book a 30-minute office hours appointment or simply stop by.

SFGF + Olink office hours for May:

Tuesday, May 20th 11am-3pm

CCSR 0237 

please go to this link to register, or simply stop by for a light snack and chat with our Olink team.

_________________________________________________________________________________________________________________________________________________________________________________________________________________

 

Welcome to Stanford Genomics

 

 

Overview of Services

Stanford Genomics provides assays, services, and access to scientific instrumentation for genomic research.  The facility is the product of combining the Genetics Sequencing Service Center (GSSC) and the Stanford Functional Genomics Facility (SFGF).      

 

Available Services: 

  • High-throughput Sequencing and Library Construction utilizing Illumina NovaSeq, NextSeq, MiSeq, and iSeq
  • Single-Cell RNA-Seq utilizing 10x Genomics Chromium
  • Single-Cell RNA-Seq from FACS sorted cells 
  • Fluent Biosciences pip-seq *New
  • PacBio Revio library prep and sequencing *New
  • 10x Genomics Xenium Analyzer *New
  • 10x Genomics Visium CytAssist Spatial Gene Expression *New
  • Gene Expresion Assays - Microarray Platforms: Illumina
  • Whole Genome Genotyping Assays - Microarray Platforms: Illumina 
  • Gene Expression and Genotyping using real-time PCR 
  • Olink Proteomics targeted protein screening *New
  • Digital PCR (BioRad)
  • Bioanalyzer DNA, RNA and Protein analysis, Qubit quantification, DNA shearing on Covaris
  • Preferred pricing on Custom Oligonucleotides from IDT - Stanford-IDT Portal
  • Streamlined ordering and preferred pricing for Oligo Pools from Agilent

 

Available Equipment 24/7:  (You can request 24/7 access to the following equipment by going to the Request Services tab and selecting SFGF 24/7 Access)

  • Sequencers:  Illumina iSeq 100, MiSeq, NextSeq
  • Real-time PCR:  QuantSutio 12K Flex, ABI 7900HT, Roche LightCycler 480
  • Microarray Scanners:  Axon Scanner
  • Imagers:  Amersham Typhoon RGB, LiCOR Odyssey
  • Quanitation:  Bioanalyzer, Nanodrop, Qubit 2.0 and 3.0 Fluorometers
  • Sonicators: Cavaris, Diagenode Megaruptor 
  • Automated tissue dissociatior: GentleMACS 
  • Single Cell Dispenser: Namocell 
  • Nucleic Acid Prep: 10x Genomics Chromium X, Pippin HT
  • Nucleic Acid Analysys: Digital PCR QX200 (Bio-Rad)
  • Microscope: Keyence BZ-X810 microscope

Getting Started

  • Stanford Users:  LOGIN or REGISTER for an iLab account using valid Stanford credentials (SUNet ID).

 

 

Leadership

Michael Mindrinos, PhD | Stanford Genomics Service Center Interim Director

Lab: CCSR 0120  -  (650) 736-2434

Email:  mindrin at stanford.edu

 

Staff

  • Michael Mindrinos
  • Dhananjay Wagh
  • Jason Wu
  • Nick Addleman
  • Vanita Natu
  • Vida Shokoohi
  • Sopheak Sim
  • Krishna Sonpal
  • Steve Stoufer
  • Luisa Jimenez
  • Tori Gyorey
  • Sherry Talebian
  • Astaria Podesta
 

Location and Hours of Operation

Location

Hours 

 

On Campus:

Stanford Genomics Service Center 
CCSR 0120
269 Campus Drive 
Stanford, CA 94305-5177 

On Porter:

Stanford Genomics Service Center 
3155 Porter Dr., 1208
Stanford, CA 94304 

 

Mailing Address:

Stanford Genomics Service Center 
3155 Porter Dr., 1208
Stanford, CA 94304

Shipping Address:

Stanford Genomics Service Center
CCSR Building Room 0120
1291 Welch Rd, Stanford, CA 94305-5177 

 

Contact Info:

Office: (650)736-1763
Lab: (650)736-2434

Email:  microarray@stanford.edu

8 a.m. - 6 p.m., Monday to Friday  

24/7 access for trained users

 

 

 

Links and Resources

 

    

 

Publication Acknowledgement 

 

As with all Stanford Service Centers, credit must be given to the Stanford Genomics Service Center for data that results in a publication. If the work done at SGSC produces data resulting in a figure in a publication, you are required to acknowledge the Stanford Genomics Service Center in the publication. Further, if SGSC staff members provided significant experimental design, data interpretation, or other intellectual contribution (as evaluated by the PI), then it is expected that these individuals will be coauthors on the publication. 

 

The Illumina  NovaSeq 6000 was purchased using a NIH S10 Shared Instrumentation Grant (1S10OD02521201).  Please acknowledge the grant in any publications using data from this instrument.

 

Return to Top

 

Contacts

Name Role Phone Email Location
Michael N. Mindrinos, PhD
Interim Director
 

 
mindrin@stanford.edu
 

 
Luisa Jimenez
Administrator/Customer Support
 
650.736-1763
 
luisaj@stanford.edu
 
hybrid, remote
 
Debra Panasuk
Finance Operations
 
650.725-7483
 
dpanasuk@stanford.edu
 
240 Pasteur Dr., Palo Alto, CA 94304-5422
 

Price List


Search available services: View: by category alphabetically
Consulting (2)
No Charge (1)
Service Work Materials (3)
Service Work Time (per hour) (3)