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Stanford Genomics

 

Overview of Services

 

Stanford Genomics provides assays, services, and access to scientific instrumentation for genomic research.  The facility is the product of combining the Genetics Sequencing Service Center (GSSC) and the Stanford Functional Genomics Facility (SFGF).   

   

Rates shown are FY24 approved rates (beginning Sep 01, 2023).

Available Services: 

  • High-throughput Sequencing and Library Construction utilizing Illumina NovaSeq, NextSeq, MiSeq, and iSeq
  • Single-Cell RNA-Seq utilizing 10x Genomics Chromium
  • Single-Cell RNA-Seq from FACS sorted cells 
  • Fluent Biosciences pip-seq *New
  • PacBio Revio library prep and sequencing *New
  • 10x Genomics Xenium Analyzer *New
  • 10x Genomics Visium CytAssist Spatial Gene Expression *New
  • Gene Expresion Assays - Microarray Platforms: Illumina
  • Whole Genome Genotyping Assays - Microarray Platforms: Illumina 
  • Gene Expression and Genotyping using real-time PCR 
  • Olink Proteomics targeted protein screening *New
  • Digital PCR (BioRad)
  • Nanostring single molecule counting
  • Bioanalyzer DNA, RNA and Protein analysis, Qubit quantification, DNA shearing on Covaris
  • Preferred pricing on Custom Oligonucleotides from IDT - Stanford-IDT Portal
  • Streamlined ordering and preferred pricing for Oligo Pools from Agilent

 

Available Equipment 24/7:  (You can request 24/7 access to the following equipment by going to the Request Services tab and selecting SFGF 24/7 Access)

  • Sequencers:  Illumina iSeq 100, MiSeq, NextSeq
  • Real-time PCR:  QuantSutio 12K Flex, ABI 7900HT, ABI StepOnePlus, Roche LightCycler 480
  • Microarray Scanners:  Axon Scanner
  • Imagers:  Amersham Typhoon RGB, LiCOR Odyssey
  • Quanitation:  Bioanalyzer, Nanodrop, Qubit 2.0 and 3.0 Fluorometers
  • Large Particle Flow Cytometer (FACs): Union Biometric BioSorter

Getting Started

  • Stanford Users:  LOGIN or REGISTER for an iLab account using valid Stanford credentials (SUNet ID).

 

 

Leadership

John Coller, PhD | Stanford Genomics Service Center Director

Office: CCSR 0120  -  (650) 736-1026

Lab: CCSR 0120  -  (650) 736-2434

Email:  john.coller at stanford.edu

 

Staff

  • John Coller
  • Luisa Jimenez
  • Alain Boussard
  • Dhananjay Wagh
  • Elizabeth Zuo
  • Jason Wu
  • Nick Addleman
  • Vanita Natu
  • Vida Shokoohi
  • Xuhuai Ji
  • Sopheak Sim
  • Krishna Sonpal
  • Steve Stoufer
  • Tori Gyorey
  • Sherry Talebian
  • Astaria Podesta
 

Location and Hours of Operation

Location

Hours 

 

On Campus:

Stanford Genomics Service Center 
CCSR 0120
269 Campus Drive 
Stanford, CA 94305-5177 

On Porter:

Stanford Genomics Service Center 
3155 Porter Dr., 1208
Stanford, CA 94304 

 

Mailing Address:

Stanford Genomics Service Center
CCSR 4256, MC 5177
269 Campus Drive
Stanford, CA 94305-5177 

 

Shipping Address:

Stanford Genomics Service Center
CCSR Building Room 0120
1291 Welch Rd, Stanford, CA 94305-5177 

 

Contact Info:

Office: (650)736-1763
Lab: (650)736-2434

Email:  microarray@stanford.edu

8 a.m. - 6 p.m., Monday to Friday  

24/7 access for trained users

 

 

 

Links and Resources

 

    

 

Publication Acknowledgement 

 

As with all Stanford Service Centers, credit must be given to the Stanford Genomics Service Center for data that results in a publication. If the work done at SGSC produces data resulting in a figure in a publication, you are required to acknowledge the Stanford Genomics Service Center in the publication. Further, if SGSC staff members provided significant experimental design, data interpretation, or other intellectual contribution (as evaluated by the PI), then it is expected that these individuals will be coauthors on the publication. 

 

The Illumina HiSeq 4000 was purchased using a NIH S10 Shared Instrumentation Grant (S10OD018220).  The Illumina  NovaSeq 6000 was also purchased using a NIH S10 Shared Instrumentation Grant (1S10OD02521201).  Please acknowledge the grant in any publications using data from these instruments.

 

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Contacts

Name Role Phone Email Location
John Coller, Ph.D.
Director
 
650.736.1026
 
john.coller at stanford.edu
 
CCSR 0120
 
Luisa Jimenez
Administrator/Customer Support
 
650.736-1763
 
luisaj@stanford.edu
 
hybrid, remote and 3155 Porter Dr, Rm 1208 & CCSR 4256
 
Debra Panasuk
Finance Operations
 
650.725-7483
 
dpanasuk@stanford.edu
 
240 Pasteur Dr., Palo Alto, CA 94304-5422
 

Price List


Search available services:
Name Description Price
Agilent Bioanalyzer - Service Work Materials Inquire
Agilent Bioanalyzer - Service Work Time (per hour) Inquire
Consulting - Director (per hour) Inquire
Consulting - Technician 1 (per hour) Inquire
Microarray - Service Work Materials Inquire
Microarray - Service Work Time (per hour) Inquire
NGS(NextSeq) - Service Work Materials Inquire
NGS(NextSeq) - Service Work Time (per hour) Inquire
SFGF 24/7 Access (No Charge) (view additional details) Inquire