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Welcome to Stanford Genomics

Overview of Services

Stanford Genomics provides assays, services, and access to scientific instrumentation for genomic research.  The facility is the product of combining the Genetics Sequencing Service Center (GSSC) and the Stanford Functional Genomics Facility (SFGF).      

Available Services: 

• High-throughput Sequencing and Library Construction utilizing Illumina NovaSeq, NextSeq, MiSeq, and iSeq
• Single-Cell RNA-Seq utilizing 10x Genomics Chromium
• Single-Cell RNA-Seq from FACS sorted cells 
• Fluent Biosciences pip-seq ^*New
• PacBio Revio library prep and sequencing ^*New
• 10x Genomics Xenium Analyzer ^*New
• 10x Genomics Visium CytAssist Spatial Gene Expression ^*New
• Gene Expresion Assays - Microarray Platforms: Illumina
• Whole Genome Genotyping Assays - Microarray Platforms: Illumina 
• Gene Expression and Genotyping using real-time PCR 
• Olink Proteomics targeted protein screening *New
• Digital PCR (BioRad)
• Bioanalyzer DNA, RNA and Protein analysis, Qubit quantification, DNA shearing on Covaris
• Preferred pricing on Custom Oligonucleotides from IDT - Stanford-IDT Portal
• Streamlined ordering and preferred pricing for Oligo Pools from Agilent

Available Equipment 24/7:  (You can request 24/7 access to the following equipment by going to the Request Services tab and selecting SFGF 24/7 Access)

• Sequencers:  Illumina iSeq 100, MiSeq
• Real-time PCR:  QuantSutio 12K Flex, ABI 7900HT, Roche LightCycler 480
• Microarray Scanners:  Axon Scanner
• Imagers:  Amersham Typhoon RGB
• Quanitation:  Bioanalyzer, Nanodrop, Qubit 2.0 and 3.0 Fluorometers
• Sonicators: Cavaris, Diagenode Megaruptor 
• Automated tissue dissociatior: GentleMACS 
• Single Cell Dispenser: Namocell 
• Cell Counter: Countess 3
• Nucleic Acid Prep: 10x Genomics Chromium X, Pippin HT
• Nucleic Acid Analysys: Digital PCR QX200 (Bio-Rad)
• Microscope: Keyence BZ-X810 microscope

Getting Started

• Stanford Users:  click to login or register for an iLab account using valid Stanford credentials (SUNet ID).

• Non-Stanford Users:  Click to LOGIN with approved iLab credentials. Or, click to SIGN UP for an iLab account.

• Visit the Customer Help Manual for further guidance using iLab's Core Facility Services.

Leadership

Michael Mindrinos, PhD | Stanford Genomics Service Center Interim Director

Lab: CCSR 0120  -  (650) 736-2434

Email:  mindrin at stanford.edu

Staff

• Michael Mindrinos
• Dhananjay Wagh
• Jason Wu
• Nick Addleman
• Vanita Natu
• Vida Shokoohi
• Sopheak Sim
• Krishna Sonpal
• Steve Stoufer
• Luisa Jimenez
• Tori Gyorey
• Sherry Talebian
• Astaria Podesta

Location and Hours of Operation

Links and Resources

• Visit our facility website for more information: https://med.stanford.edu/sfgf.html

Publication Acknowledgement 

As with all Stanford Service Centers, credit must be given to the Stanford Genomics Service Center for data that results in a publication. If the work done at SGSC produces data resulting in a figure in a publication, you are required to acknowledge the Stanford Genomics Service Center in the publication. Further, if SGSC staff members provided significant experimental design, data interpretation, or other intellectual contribution (as evaluated by the PI), then it is expected that these individuals will be coauthors on the publication. 

The Illumina  NovaSeq 6000 was purchased using a NIH S10 Shared Instrumentation Grant (1S10OD02521201).  Please acknowledge the grant in any publications using data from this instrument.

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